NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209221_1000007

Scaffold Ga0209221_1000007


Overview

Basic Information
Taxon OID3300027609 Open in IMG/M
Scaffold IDGa0209221_1000007 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)144525
Total Scaffold Genes145 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)117 (80.69%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034638Metagenome / Metatranscriptome174N
F078988Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209221_100000760F034638AGGAGGMTYLRRAIVLLLFSCCIAPLAFGQLTLKVKIQSTPMERQLLFAKLNDRAATHHIRFVLVEEGFDYRVAYGVAGPVLTPYGPAAASASVTRVFDPSGAELFTFARDGRWTPDAAANATAKEIIKRIRRLRGI
Ga0209221_100000799F078988GGGGGMQRKLLARGRQCRGSGEINLDEREGIGQDGIMSRQTVPSNLSTALAEFGSQRAERIASQLSIEVCGFDRCGRFFTERSETCDVSDAGCKFYLRTEVEREAVVALRVITRSDRRGSVAAPVLFQVAHMERGSSGWTLGAWKLRAEDSWPVPGVQARDGAASFE
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