NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209221_1049422

Scaffold Ga0209221_1049422


Overview

Basic Information
Taxon OID3300027609 Open in IMG/M
Scaffold IDGa0209221_1049422 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1116
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0209221_10494221F037842AGGAGGLKQKTVKARGEGVEYPALTGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKANIAFSIDPELSTVKGGNIVRWRELKTRPVMRRVARR
Ga0209221_10494222F033134AGGAMKPEQESKQLITFNSLHIEVLGPRELGNSQLAIRGVTEFLDGVELDVGKLLRERAEMSPILEGFRLRFG
Ga0209221_10494223F007233GGAGMTSRNQKEHKRQLNLGTFSDGIKGKVLEAVSISNELECRYISLEFEDKTELTISLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD
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