NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209528_1000005

Scaffold Ga0209528_1000005


Overview

Basic Information
Taxon OID3300027610 Open in IMG/M
Scaffold IDGa0209528_1000005 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21535
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006230Metagenome / Metatranscriptome378Y
F020044Metagenome / Metatranscriptome226Y
F069385Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209528_100000511F020044GAGGVNLRCYLLSLLRIHSPNCESCNAREKYGVEMRQRLEELNWRTLPDSHGNGDHGRVVEEFDSGPGEVISTPVSLMAQQRTT
Ga0209528_100000515F069385GAGVKTSPRAKTMALDPKTHQLFLSTAEAGQFEVLMVGH
Ga0209528_10000055F006230GAGGMPIRTTRSHALQLACFVLFVWTLAGAQAKPDRQSNDRQNRVPTPATPGADYSGMYSFLREGEFIQITVEDHGRVTGFVSRFGDAESDRGVFLDHFFKSGKLDGNQLAFTTETVHGASFEFRGTLDRGEGKSRGDEAYYVLKGTLVENTTDESKKSSSRSREVGLKSFPQDMSPPQAEKK
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