NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209122_1149157

Scaffold Ga0209122_1149157


Overview

Basic Information
Taxon OID3300027613 Open in IMG/M
Scaffold IDGa0209122_1149157 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1121
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameItaly: Sant'Andrea, Tuscany
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021878Metagenome217Y
F052246Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0209122_11491571F021878N/AMTFCGVFEQQKIYVVLSAFFGTQVFYCEAFRIRFERQDVNADGRILFFKERDMFGFHWIIYSGHIQCGFVTGIFCEALFVDFRFV
Ga0209122_11491572F052246N/ALVKFGHDVFAAVYGGRGTILVELCDAMTTEPGHIVFVDNFGMSRVVVVVVSGSEERLEVCHEKESNGVLLFYVIKFQLAIVGVGILDLLR

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