NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209122_1339011

Scaffold Ga0209122_1339011


Overview

Basic Information
Taxon OID3300027613 Open in IMG/M
Scaffold IDGa0209122_1339011 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)628
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameItaly: Sant'Andrea, Tuscany
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021878Metagenome217Y
F042609Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209122_13390111F021878N/AMVFCGVFEQQKIYVVLSASFGTEIFYCEALGVGFEREDVNADGGILFLEERDLFGLDGVIYSGHVQCGFVTGII
Ga0209122_13390112F042609N/AEHIMFVDNFSMSRVVVVVVVGGSEERLEVCHEKESDGVLLFLVGEFQLAILWIGILDLLRWMLDTERNVVFESGRVGERVEAAVTHVGGAFMFGSVCH

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