NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209330_1011959

Scaffold Ga0209330_1011959


Overview

Basic Information
Taxon OID3300027619 Open in IMG/M
Scaffold IDGa0209330_1011959 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1930
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000838Metagenome / Metatranscriptome866Y
F054240Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0209330_10119592F000838N/AMLRGAELPVQSEWVIFVATLAVVGLFSVTLAVLPRSWIAKACKKDRDHEHLFLEPLKWLGGFAAISYLLALVAYLAPHRWNLDPQLMLSLCPLYFVKMTFDPSLVTTFFLLAPMNAAVYGSLGLTLGCAWLAFRKHQADG
Ga0209330_10119593F054240AGGMEPGWKFRLMIFCRLLKSSVFFSVTVLLGFAQLCLAQNTASNQSWAASSQQQDPSGGMNPTRTSEMHAVVDGRIIDKTLVETLGPDGQYVLYSETEKESVRVNDTTVRNIERAFGLSPDGERTLIQERQEESRSLPDNEEKVVRTISNPDANGALQVVRRELDDSKQLSPGVRETTTNVLTPDVNGGLTPAVQTIERETQSGNGTIDFKKTTQLSDGTGHWQLSEVREGTSKVENGQIRSKDEHVLRPGSNGNLVVVERTVSKRTDAGAGEKRDTIDKYSTN
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Institute for Fundamental Biomedical Research
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