NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208951_1025275

Scaffold Ga0208951_1025275


Overview

Basic Information
Taxon OID3300027621 Open in IMG/M
Scaffold IDGa0208951_1025275 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1852
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002268Metagenome / Metatranscriptome576Y
F008554Metagenome331Y
F031870Metagenome / Metatranscriptome181Y
F034176Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0208951_10252753F002268AGGAMSGTPASPGITGFIEIFEGRLVKMKLHLKAELNKAKHERDRKIIKSHLADAKKLNRTLKEMRKANTKLCPHCGEAIE
Ga0208951_10252755F008554GGAGMNIQEELINKAGKQMANDIDREVLWGMLQGIGWIRIMLPRLIDNDHAVEIMCWLEDNCKGSHERWGRDFIFENERDANWFVLRWGTV
Ga0208951_10252756F034176AGGTGGMKHNYVKHRDNVGDLEYFISKFECRVEDSREYNQHVRPAPYYRDFYDTDRSKIETEIVPMKAIHLTRDNLARLVAEQEHMQRLTDDREYSKKIWADASRDQMVRDKNPAVEKAYQKYVILLELARK
Ga0208951_10252757F031870N/APCGGVAYYDEPTNGMNYFCAQCECVVGSDAMPKSCKDEEAKWEMWAELGGKGWDYFAEPDEYF
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