NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209753_1023614

Scaffold Ga0209753_1023614


Overview

Basic Information
Taxon OID3300027622 Open in IMG/M
Scaffold IDGa0209753_1023614 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1919
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)8.0Long. (o)-156.0Alt. (m)Depth (m)550
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005336Metagenome / Metatranscriptome404Y
F006919Metagenome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0209753_10236141F005336N/ANLKRLQNKRKSISAFFNMEASTMESGIQEGGGVVAELDANIILSSKGDVMSMPDKTGRRWVELMNIDKKKTMHKELEQMLIDIAIKHDPKTKELIKIEPDIGLGAWWHLRENFKDNKKVMSLIIADYIDGVNAILKKHKKDIQGAVHGYYVRRGTVAVKHPSGRMVGGDSELSEWNVYDEQVVDKIKIIKVHTFNSRQFELDWVKDSVIPRLGKIPHTHWVNGARDLSNYVTKIAQTEVQALRRSKG
Ga0209753_10236142F006919AGGAGLKSYLDLLLTEFAQTSASNLVFDVASQGRASSALKIPISGPMFKRIWPDTIRTTVFHVLSAYDIYKLKKLEGGKKTISAFFTMMSRYLESGIAGGGGIVAEMEADVLVSAADDIMSQVDNKGRRWVEVSWFANAQRGGTGPKFAVVERELNDLIRNLVVKHLEPIIGNRARTEHEYVLWGNMKRELKDSKKLSLVIKDYFDGVEKIIKKNKEVMGNIFYGYAKSKRMTDNAWDEQIVNNIKIKKLHYLPKDEEVEDEEQQENIDAFVEKYKIPAKAWTYSSELEIYTREVVAKEIKK
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Biomedical Sciences Research Center "Alexander Fleming"
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