NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209828_1020652

Scaffold Ga0209828_1020652


Overview

Basic Information
Taxon OID3300027623 Open in IMG/M
Scaffold IDGa0209828_1020652 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3025
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F024709Metagenome204Y
F048070Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209828_10206521F024709N/AQIVGLRTAVERADGRGIESALSIIGQPVARPVDGDANSGRFAQHLEAIQPEEEAAPARFIAQSILGRRIHEGGGPSTGAPHSARNTRARSVSQQSVASVGASRDSRRESRPHAEEELRGSLFRNLLG
Ga0209828_10206523F048070AGGMAHVVGFVSLASAHQSTSYLKHARMAVAYQLVLVHCGMTTVASSVVVTKRRRTESKCCTGGTRNPLGSTGAGGSLPISVACADFGHTYGYGP
Ga0209828_10206525F013269AGGAGMVTADTFFLPISVNDKRGGIRVCVDDHEASDGFALQLFLPIVVGRGYVVADIDVRIAGCDPMVEVTFVTLLRLTQGLDYDGDLLAQVGHKHAFSC
Ga0209828_10206528F013269AGGAGMVTADTFFLPVSVNDKRGGIRVCVDDHEASDGFALQRIFPIVVGRGYVVADIDVRIAGCDPMVEVTFVTLLRLTRGLDYDGDLLAQVGHKHAFSC
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