NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209828_1085297

Scaffold Ga0209828_1085297


Overview

Basic Information
Taxon OID3300027623 Open in IMG/M
Scaffold IDGa0209828_1085297 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1066
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019271Metagenome230Y
F024709Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0209828_10852971F024709N/ARTAVERADGRGVESALSIIGQAVARAVDGDANYGRFAQHLGAIQPEEESTPARFNAQIILGRRTHEGGGPSTGAPHSARNTRARSVSQESVASVGASRDSRQDSRRRDEEE
Ga0209828_10852972F019271N/ARSRRQAGLTTVANIVMDSTWIPTIQHVPVTGDGVIHADVSWTESSTAVAIKEVIPVAWLKSTLPSMTRNFAYDPQLALRHFPRLNRVYGPYTYVWPNSTQATLIGSDPSVQVLPNGFLVPPVQHLDSVHRRLVTTTEEATVVIPQCTNTSWYATAIRACFEYEVLVSADARDTNPTTWAMMACHFLHRYDDKQKN
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