NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209149_1041683

Scaffold Ga0209149_1041683


Overview

Basic Information
Taxon OID3300027626 Open in IMG/M
Scaffold IDGa0209149_1041683 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3781
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000163Metagenome1825Y
F006725Metagenome366Y
F008464Metagenome333Y

Sequences

Protein IDFamilyRBSSequence
Ga0209149_10416832F008464GGAGGMQTLTSIRRRGWSGRIASLPLSFFFFLVFLGKATGRTVRPIWTNEGSKRVVPLREVPFGGMNDVPLNFGGKIPQKLKFWGRE
Ga0209149_10416833F000163N/AMTSRGLTSGFNFCSRGHLCMALMRLPMKFGADIFIQSGVIDIFRKLKMAAAAILDLFG
Ga0209149_10416834F006725N/AMAAVAILNFGKMSMTGLDKDISHRIIIIWEDAPRRRGDDNVTKSRNQKLIRVKSSNESLKHMCVDLSEYNRYLNRIWYMTQIPHCQHAGMAKFT

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.