NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209149_1098818

Scaffold Ga0209149_1098818


Overview

Basic Information
Taxon OID3300027626 Open in IMG/M
Scaffold IDGa0209149_1098818 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2290
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021204Metagenome220Y
F071723Metagenome122N
F094501Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209149_10988181F071723N/AMFTDRDPKDDKESLTQRALRLEERNARAASASTAEGERKEDNRYDSNRSTFTTSMIRSGAGTSRTVPDSFAPQSFTGTNMDADAWLAHFQRYIEYRQLSENDVIAILPLFLKEVAIDWYENLPA
Ga0209149_10988182F094501AGGMNGSRRTFAFIMVCFLIGGFTKVEASRDYDYISRLNYGVWFTPVRTVKMVTDIWMQVFDVPLPDVPVMDDDIRHATNHTPNCTGSMPIRRRVRCREDRAVYIAVHDLYTNMTREVIRTLEHLHDLLPGEKNIATAGISKRALAPFVGWVMRGLFGTATEDELLPIETQIRRIAQGVVIMAEGLEVQNNRLVGFMSMAVDDIDNIINMTVYQQEEIRQLREQVSWNPNRNSPGSGTQRMPGLSLY
Ga0209149_10988183F021204N/ALRDGQIKSKQRYDQSSEEPEMQVGEKVLIHDPTTKTGECPKLKKRWKGPYMVVERSTDGLSYKLRDCETGKELRSRIHANRLKRFNDDRDAFFHKHNISPKSTLDSPSSLVRDDNEDEDWCPIKQILNRKIQNGKEMFLVRWDDRQGSKSWVPAEDVTDYAIQQYYKEKVERRKKRGRRR
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