NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209149_1141590

Scaffold Ga0209149_1141590


Overview

Basic Information
Taxon OID3300027626 Open in IMG/M
Scaffold IDGa0209149_1141590 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1742
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000024Metagenome5722Y
F000089Metagenome2423Y
F039858Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0209149_11415901F039858N/AVCKDDSHYLAELKQQKSKRLILLRSTLMLWQCAAKVISASLIFAVLVLRGNDCRPYTPF
Ga0209149_11415902F000024N/AMSLKLVPFESLGAVSYSPSIVTMAVSVAVCEIFSVKEWCDLENGVAVRSRSLEVAPFDRSPTSSYSPSIVTMAIFCIVCEI
Ga0209149_11415903F000089GAGGMSLKLVPFESLGAVSYSPSILTVAVSVAVCEIFSVKKWRDLENQVRSRSRSLKMAPFDRPHAT
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