NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209149_1195013

Scaffold Ga0209149_1195013


Overview

Basic Information
Taxon OID3300027626 Open in IMG/M
Scaffold IDGa0209149_1195013 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1287
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Auchenorrhyncha → Fulgoromorpha → Fulgoroidea → Delphacidae → Delphacinae → Nilaparvata → Nilaparvata lugens(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021878Metagenome217Y
F042609Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209149_11950131F021878AGCAGVVLSASFGADIFYCEAFRIGFESEDVDADGGILFLEEGDLLGLDGIIYSGHVECGFVTGIICEALFVDFRFV
Ga0209149_11950132F042609N/AVSGCIKIGGHNFTYFSTLVGDVLVKFRHDVFAAVYGGRGAILVELRDAMTAEPGHIVFVDNFGMSRVVVIVVGGSEERFEVCHEKERDGVLLFHVGEFHLAIVRIGILDLLRWVLDRQECGFRERTSGRTGEDSCCMRELHRCVWICVPLNWTCWLRARNDVLWCLRAAEDLCGAVCLFR

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