NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208942_1001172

Scaffold Ga0208942_1001172


Overview

Basic Information
Taxon OID3300027627 Open in IMG/M
Scaffold IDGa0208942_1001172 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9688
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.5046Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001066Metagenome / Metatranscriptome788Y
F043442Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0208942_10011723F001066N/AMTADIFKITPLDEHASKVAINGRVTVSPFNSMKHMKRANIPALCDQCVYRSIDTGGNGKCPKYEAGAVCAIRNDFIALINEMDTRNPDHIKTMLDMLAKLSFENVLMALTESKFDGNIPDRNTKSEVNTLLKIISTIGEISSKITVSEEQRFNKQGDIESIFRQIKAQKSSSE
Ga0208942_10011724F043442GGAMKIFFNGNNKAHMEALEQCKVKNVMLSFKYSYANIGKFRSKFEKIFVVSGTDTKPDRYHELLIKHKGVYDYATQFDVFYNMDETIKHLNKEREMGIDWTLPVLQENYLNHLSRIRPEPNSYVCLGEIHGREETEDQVRKLPANLKYHGLAKGRYITHNRMMESLDTSGWISAAMSKKCEVWNSNSTNFMFFGDKGRSMIPMLNHACEVHKEYLSIIGVKREDIIAGEYYALLKAPFALLYMPMCKQMGILKDNFNL
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