NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208942_1010780

Scaffold Ga0208942_1010780


Overview

Basic Information
Taxon OID3300027627 Open in IMG/M
Scaffold IDGa0208942_1010780 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3035
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.5046Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001460Metagenome / Metatranscriptome690Y
F002387Metagenome / Metatranscriptome565Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0208942_10107802F002387GAGGMASFLEDVNQMVIDAVYQDISEQLLEDWINSNLDEGQYYADKQFAEMSGDKFIQDEFNKFYDIKEGDEDYLC
Ga0208942_10107803F001460GAGGMLGYTESDLNRMINAVHDAKLFYLRTPSDLMDKTELRKDLEDAVSFLQGLWAEGYFD
Ga0208942_10107804F063705AGGAGMTKSSHFIEYMKIHLISLNQDWEATKNGEPLKDDEYDPSDDYFLGAIEATEHLLSVATDIMNSTNERV
Ga0208942_10107805F000263AGGMNSEDIGLPPHLQRMVNYGVSGLDIMHGELKNLMLIAEQQLASAIETEEESEEAMDSMDRTRCEGALDTLVDIYNLTYQLSFAIGARNEA
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