NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209422_1011618

Scaffold Ga0209422_1011618


Overview

Basic Information
Taxon OID3300027629 Open in IMG/M
Scaffold IDGa0209422_1011618 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2171
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004185Metagenome / Metatranscriptome449Y
F006683Metagenome / Metatranscriptome367Y
F087856Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209422_10116182F006683GGAGGMNRSDRADVRQVNVRVNGITFESVRVRHDLVANDFDIVIDDPHVGRFALTPAVPDLELRDEASDWRQVTLDELKKVLAADGELAEASEEPQASETAERESFNRPVAEGEHIMNAEIALFRAAIPFLQLPFQQNKFVSNLFMVLNLSKAKACLQRAGFQPKVDSETVLFDSRNGQPIQLIQGRYGLPRAKS
Ga0209422_10116184F004185AGGAGGMSLQKEFIRDGKRRIIGSVTTGYVGSFETIVRDEQNDITGRTSERFQTTRDEDGKLVSINTADPGLLIGRKK
Ga0209422_10116185F087856GGAGGVTMSKLRRADYTEHLAGKTIKRVHWNNDEERKCLTFEFTDQTLCSFKFALAMDEEAELSEFVSGNPSTHRKLIALPLVRQPIKPLV
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