NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208133_1000830

Scaffold Ga0208133_1000830


Overview

Basic Information
Taxon OID3300027631 Open in IMG/M
Scaffold IDGa0208133_1000830 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11456
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030432Metagenome185Y
F090400Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0208133_100083021F030432N/AMNNTPFPITTVQNNKFLVSWPKWQSIRQFDTKKRLLAVLFADIGSEEVGIAIMAGVLSGGEVDIMWITMHTWAQDINGDYARYLEDMYDIKGVAFNNEDEAIKFQD
Ga0208133_10008306F090400AGTAGLNGTGGGTGLSISPLSTSSITMDDSYLNGLFKNIHRSDYVKRYEVIESTEDVLALSVAWKRLRDNKDKSTHYMGITSLLDDNLFRRVEESDRIRANEIRDYFSKKIMLWSLKGIKLSKYRQDLNTFIHGNDKKITEELLPIIFRLPEFYEYDVKFDSFKREVKLDLATFDSPPLKQITTLTPITSFYKSNKRIKQFEYWLKNSNGNAHMISIEPKNPLKHIWDKMFINEHLRIEGTYYPKKYDELQYYQLLNWSLA
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