NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208133_1088103

Scaffold Ga0208133_1088103


Overview

Basic Information
Taxon OID3300027631 Open in IMG/M
Scaffold IDGa0208133_1088103 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)728
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076096Metagenome118Y
F092024Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208133_10881031F092024AGGAGGMKTTRNSYRLREILFCTRNQIVSLKDIQMDMLRIDSKVANQIATQISALEEVYKHQLS
Ga0208133_10881032F076096GAGMVYAMSNILLFEYSGGTRYNTLSIEGYRTMVCYNTEWENPLYWFDKLLTYTEHAELRTIERDLPLVDFLPLESKFLYRTLKRDVYSMTFETVVNHKRMEIAINSLGYVMTVYPVLITKADKFQYKYKQYLGAFKQPDDYCPPVISDFNFLEGTI
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