Scaffold Ga0209339_1000281

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209339_1000281

Scaffold Ga0209339_1000281

Overview

Basic Information
Taxon OID	3300027632 Open in IMG/M
Scaffold ID	Ga0209339_1000281 Open in IMG/M
Source Dataset Name	Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18825
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (45.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Zanca-sant'andrea, Tuscany, Italy
Coordinates	Lat. (^o)	42.8072	Long. (^o)	10.1411	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000012	Metagenome	7108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209339_10002814	F000012	AGG	VPFESSGAVSYSPFIVTMAVSVAVCETFSVKNWRDLENQVRGRSRSIKMAPFDRPYAIFYWSAIVNIALSCTIFKLFDVE

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