NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209339_1001385

Scaffold Ga0209339_1001385


Overview

Basic Information
Taxon OID3300027632 Open in IMG/M
Scaffold IDGa0209339_1001385 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10347
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameZanca-sant'andrea, Tuscany, Italy
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043136Metagenome157Y
F057729Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209339_100138510F057729N/AMSKIGPRPLLDLLIRLDDGCYELGRIYIDIQFRQIPMTAVAVQQYRPAMDSCMNGMRLYTIGALAAPDSSDPGEYGRLAYGKF
Ga0209339_100138511F043136N/AMADPNIKDTARTTDSTQATGLMASSASPPGLANKFLSSDTSATAMAKFSLELRDLEAAAALEALGMVPETQWPGTEASTLELSTDSEVTFRKVLGSAGVLATRPGVDPLEVTRPLPEFGWTSQSPQATSPSVIVRQPTRTSPGPWPPVASYVFGPSTTQVDPDIPYRESRQTTHHPHTEDPELFHKSNKPAY
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