NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209339_1055110

Scaffold Ga0209339_1055110


Overview

Basic Information
Taxon OID3300027632 Open in IMG/M
Scaffold IDGa0209339_1055110 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2867
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameZanca-sant'andrea, Tuscany, Italy
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011565Metagenome289Y
F023283Metagenome210Y
F099954Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209339_10551101F099954N/ARVSERSEGTPGWIMGISLAVIIGAVLYTRRSAPSERRQPHIVSHEPEECNAVVTTQSAAVQPSRALFDM
Ga0209339_10551102F011565N/AMSTPKDLGNLLYHSAVIGGLSIGYTMISKKLFKMKPADLGRLDLEDSTKLVGTVALSLWTQDMLVKQGIIPANIIKAT
Ga0209339_10551103F023283GGCGGMMIGGAVVNALAFTGGNYLFSMLGRSNEAEKERKRHDMAIEALQRAESEYQHKRQLRLDYLNKQLRAEHHSAQVFEDVDAAAREYWLVTGGDQEMLDKAPDAGAEPTFNEYYMPSTSQKEYELLFITGGLALTGWAAFKFL
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