NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208988_1076091

Scaffold Ga0208988_1076091


Overview

Basic Information
Taxon OID3300027633 Open in IMG/M
Scaffold IDGa0208988_1076091 Open in IMG/M
Source Dataset NameForest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)843
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameEl Dorado National Forest, Georgetown, California, USA
CoordinatesLat. (o)38.88Long. (o)-120.64Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000440Metagenome / Metatranscriptome1137Y
F035434Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0208988_10760911F035434N/ATGMRRGWQVREIDAPRRRQNGLLGQGLHVLDPAGLTLVEDELENRVGGAGPVDRKYRAQSYLRRIVALTGATQMGSGYALDIGTTRFQVRYRYVTRVRDVTDPKCAYEETCFYPAKKEMPKSEHIATALLQLKNKPALFDRWAAQSGAIKADGQAFRPRGVIHFR
Ga0208988_10760912F000440N/AMRMQTKCTPAQRAAEYLKRVVALTGAEQVRGDGYWLKTGRRNFLVDYKFVRVISHRGKSTCFSVPTDPNMPSAEVVASALLQLKNNPRLFKKWRKQPGFTFKANGKMFRGAGWPAG
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