NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209625_1000681

Scaffold Ga0209625_1000681


Overview

Basic Information
Taxon OID3300027635 Open in IMG/M
Scaffold IDGa0209625_1000681 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8549
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F026085Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0209625_10006811F026085AGGAGGVEKPLWEQQSFPEKLFRLSVLLCIVGWGLSVIYFASHVGPGQVPSVRARDLASYFFSAFWIFVFFYAQYRVVPRFIHRDLDRRVGLWHAGGSLALLMVGALHVLLPQTKLDVPSSLLFWITLLGEGVFIGNVVWSYVRGEQAVPFLPVVPDAKATPAHVPDDSVKNMGWPKSPVKLFGIGAAVFAAGGLISLILDVPSFKFPVPWSGELHFVPFGFLWLAAAAPFAIFAMLYKFLMDAYDLVFEESLNRIHFVVTIITVLDLVRVFSAWEQWMGTKFATFFYGAEFQWLAVLFVLSAVVFAINAFRSYRRTAVRT
Ga0209625_10006819F000188GGAGVLGSVTRGARSVGDEAGISALNWKDTGKFLWRPDFRPRMNEWVADFALAGQAALDGPDWASRMVLFRLYYLGLASYENARHFLGLGEPSWVNWTEQIRHRCGKELLSRGMFPPRKYFTSG
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