Scaffold Ga0209625_1047800

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209625_1047800

Scaffold Ga0209625_1047800

Overview

Basic Information
Taxon OID	3300027635 Open in IMG/M
Scaffold ID	Ga0209625_1047800 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	955
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002112	Metagenome / Metatranscriptome	592	Y
F028908	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209625_10478001	F028908	AGGAGG	MMKKGYGAAATVVLLLCAVFPSQYGRAQEGSPLRGLRVKVHYKGSGTVDEKHKILVFLFDSPEFGHSNVMPFAVMSTSSKDGTVTFN
Ga0209625_10478002	F002112	N/A	VDVFLPGPGNQIHDLNPSSFPPVGLFWTTEIPVAGVDMQLGKGSASLEASDVAILDYGFIPNALFGGGPPPIPGTVSFKVAWSGVTERLNIKNTDPVYGGFAGEFVRTSAQMEWSAAVGDYTFVSDPMVTSSSTFAELGHERNGSFLP

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