NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214469_1071097

Scaffold Ga0214469_1071097


Overview

Basic Information
Taxon OID3300027636 Open in IMG/M
Scaffold IDGa0214469_1071097 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 HiSeq
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1050
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)57
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085478Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0214469_10710972F085478N/AMFLMSNSSFHISENSCYKIKKINKISIIFRPLLIISFLFTILYFHIDVYAQISTIENDNNVQIIKDPEKEVPSLVISLDEKEVEMEPFMYSHINFSNKIKGSEVNESQENIVTKIGPAKLYETQSDIDTTLTLKHGDKISLSYEKQPLTIKAYLIDYDTEDENEIYPIKQIDLSTFSIPNNSPAGLKSLEIRSFYDNNEQITYTTSVFVESSTPVITTQNPEDDNEEENNDN
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Institute for Fundamental Biomedical Research
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