Scaffold Ga0208612_1000360

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208612_1000360

Scaffold Ga0208612_1000360

Overview

Basic Information
Taxon OID	3300027638 Open in IMG/M
Scaffold ID	Ga0208612_1000360 Open in IMG/M
Source Dataset Name	Polar desert microbial communities from Antarctic Dry Valleys - UQ889 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	20853
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (73.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location Name	Antarctic Dry Valleys
Coordinates	Lat. (^o)	-78.1358	Long. (^o)	164.1187	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022684	Metagenome / Metatranscriptome	213	Y
F093584	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208612_100036028	F022684	AGG	VDEESKPDADDRPPICPACGVTMGIVADEGEATRYACLECGFSDEVPLPWATDG
Ga0208612_10003609	F093584	AGG	VRVNPYGDERPARLLRLLRPAPHGWVAKAQRILVDMSVRQQPAVEERWLTDGDLAKLGRELEIDPMFRQRFDADPVAAAEAAGMHELALGLEQELRELVALAERIANDDVYRAELDTDPVAALVAAGIPAATAEPLLQALAVPDEVLAKLPEVVAHRHEQLPLKARLLFLLLGSTAVAEKIRSASHGA

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