Scaffold Ga0208612_1005445

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208612_1005445

Scaffold Ga0208612_1005445

Overview

Basic Information
Taxon OID	3300027638 Open in IMG/M
Scaffold ID	Ga0208612_1005445 Open in IMG/M
Source Dataset Name	Polar desert microbial communities from Antarctic Dry Valleys - UQ889 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4818
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location Name	Antarctic Dry Valleys
Coordinates	Lat. (^o)	-78.1358	Long. (^o)	164.1187	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023704	Metagenome / Metatranscriptome	209	Y
F050947	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208612_10054452	F023704	GAGG	VERRIEEERARVEAEYRQVLKSSVEFERRIRDRWREKCLAKNWRIAELEERVADLERRLGEREDPLE
Ga0208612_10054455	F050947	GGAGG	LRTIEAEGERVERRRSAVVEIRKHLAGLYRSFVLWASLYGEVDDHYEKERREQVVGLLDELSNQYLPRSVWLTEDSRKKVENFVIRSEGLCSEFSAEIEDQGYPRVRRSMERRVSKKLRPLKTEAESGLEAELAEPRRPGWRERLRK

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