Scaffold Ga0209076

Basic Information
Taxon OID	3300027643 Open in IMG/M
Scaffold ID	Ga0209076_1000001 Open in IMG/M
Source Dataset Name	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209076_1000001 Open in IMG/M

Source Dataset Name

Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50674
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (76.27%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

50674

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (76.27%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	Eel River Critical Zone Observatory, California, USA
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Eel River Critical Zone Observatory, California, USA

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002498	Metagenome / Metatranscriptome	553	Y
F009059	Metagenome / Metatranscriptome	323	Y
F028125	Metagenome	192	N
F104542	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209076_100000114	F104542	N/A	LDSGFFIAVANVGFILFLAESTYADALDTSVSAPVGTALIAIMASSIGFASYLLRSADETDPRRIWRLRRFVSKPPLAFLIFIMAVGVWTAAGFIFSPWSLNKTASGNATYFFYSYQIWYIAASTLLLVSFISLPVISFYRQSKTVQDRKASLSMKIISICWAFFGVLTLFQIAAGGLFLPIAQQIGSVADSLLFVLIAFALREPTILGRIVTSGETVSQAVYANPSIDTIVLYNTESDRRSLVEAFVKDGLATGQDVVFQVAKAEVPFYRAILKASALTDTFLGEHSVTIQPIEGTVAPREINGSLPASVPRERRELIDLDEMDKDRCRDIIDQMTIAGSTPRPKHVGRIWALNVDGAHPGVLDLLQQANPTARVIDLAMQQDTFSSMVNMKHPDILGNRLLLEYEPTSDYEEIVKKFVREFQANVESVAIFTSAGSPIYRQFRDQRNISLFSFSTKTSSPARLSDEQVLLPERDTSLLLDAVDKLLQALSRKRIGIVFDVFTDIILSQGFEKAYGVLSSIVEMTESEIASILVLINYDALEPRILGAVRGLFRSQLRFNFEGLKTIKLQGSRLETSFEDEPLSGVHESSGGIRA
Ga0209076_100000127	F009059	GAG	MERIVEVFEARFGDPYLDPTAELTFEELTAAFPGVPVAELEEGLLHWTSHSGERTLSTKTIENDGYETRVWYIHGLARHQIDPSSPSSRHVALG
Ga0209076_100000152	F028125	AGGAGG	MGSRASMARMPVFLLIGIILLSTPLASDTFPSFQSSAAASPINSPTLNSAAINASMRQVLTWAESRVLPNGTATLQGTSNNLWATSLVGRTLTYLQLEIGNSTTRTIIQNMTKAEHILLQNPSFVSYGIWSPANLNTQFQVHLDAQKFLSRTYGLTLDPTARSDLINVTQNMHLNLPLRSDYFDTVAWTLSNAVWFAHYSGSSLPPASDFTTAVQDLNTNYNLSGATSAAADPLIDFAKLLRFLKPITYTDSYFRLQGNSLSQSYQTLETGLANQLVKRQQSDGNIVTVNPYKSYLVEDFARDLDASVYLHNNLTYAYSAYRAESYLTSRYLQSNGNFSLPDNGEGLYPTGTYHMLSIANDLRSCSSTAWYNILTSSSKLLNYTLTAQYPDGTFRFFLNITNPGNAITTVNTVSGLVDSYLVIHNTNVLSPETPVSLATCQTISSPSLFQNLSWLYIVIPLALVVAVAIAYERKHRTKYHGQVEK
Ga0209076_100000158	F002498	N/A	MRIYLEIQIAFVKAQERIYSLNRGVESLSREEHGLFFDTVQRLGLSNEVKLAAVALYLDFKSRPIGEYNADHKNLDIFLIASVSLAAKAMGDLRTDHEFESRMFVSREKLIDAEERIIRSFGVQDSIIPIPDLVSQLTKRHIESVAEGFATRELVSNSEKMELVQRSYDYLDAAVEKGLNPKMSYRGRAAGVMLKAIQDIGLQISETDIARAAGFDKRSMEINKDVIDDLLKDSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209076_1000001

Overview

Ecosystem & Geography

Associated Families

Sequences