Scaffold Ga0209076

Basic Information
Taxon OID	3300027643 Open in IMG/M
Scaffold ID	Ga0209076_1000025 Open in IMG/M
Source Dataset Name	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209076_1000025 Open in IMG/M

Source Dataset Name

Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19255
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (78.26%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19255

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (78.26%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	Eel River Critical Zone Observatory, California, USA
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Eel River Critical Zone Observatory, California, USA

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001816	Metagenome / Metatranscriptome	630	N
F004426	Metagenome	438	N
F013876	Metagenome	267	Y
F014601	Metagenome / Metatranscriptome	261	Y
F025249	Metagenome	202	Y
F028763	Metagenome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209076_100002511	F004426	N/A	VDDELRVSTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEATKVEIRIPESGSTIEYEEWGNGMDLTGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTITLTESLIDKHWDETDQSTWRPLRLIQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLALRGYGPFEVSVNGELVKPEELRGSTLLPVNIPTEYGKITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNDFEHDSVQWRVFEKAMRGFARNRVHKFLKQTASRRELRSIQYLNREIAERLRRSLRRNVQILSRALVNPRVSPKVKNVPGKTRKEIVLGERRHRKGKKHSREATRSVIHLKDQILAFDVAHGGDRGQAYVETDKSGVRTVFVNMDHPMWYVEAGMTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALT
Ga0209076_100002515	F013876	GAG	MSSIDDPLLKELLAALKEDTQHMAADLLGIITTNALIAVFALFLAIATLIRIILFPPRFGPGPGPGLIETTLTFVLFALSVVSIYNLLRLRERYARLQALAEKLGR
Ga0209076_100002516	F001816	GAG	LKMIEVFADKCAKSTLLNGPFGGDDRAFDRLLGPAGILTRTSLVKATMDGRVTYYGRTEAGKIYQQILDTELNFLDPYTGGEVWKK
Ga0209076_10000254	F014601	AGGA	MTGSTGNTGRPSPIPRAVLAGILAGIAAAVISYYVINSILGLIIGFIAGATVGSRTVLLMHKAREQDQ
Ga0209076_10000255	F028763	AGG	MSDPARSKRRIALGAFAIIMGCVSLVGLSSTSYYFGIGLFGGAYGAVMIALGVALIAKKEAVT
Ga0209076_10000256	F025249	GGA	MSSLDSWFNALASENKDGSSGSGARTPPPSVFGIIVVGLLAGLVVGLVVGPNFTLQGFFLGFAGGALITAGLYFYSSERGRPPR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209076_1000025

Overview

Ecosystem & Geography

Associated Families

Sequences