Scaffold Ga0209076_1016161

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209076_1016161

Scaffold Ga0209076_1016161

Overview

Basic Information
Taxon OID	3300027643 Open in IMG/M
Scaffold ID	Ga0209076_1016161 Open in IMG/M
Source Dataset Name	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1985
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	Eel River Critical Zone Observatory, California, USA
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010345	Metagenome / Metatranscriptome	305	Y
F021735	Metagenome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209076_10161611	F021735	GAG	MLALLRDQRRAGAGERTAPALSLPLRIKPARACALGWSPDLFTLTLLVGNASLRAEDGALLARGRAPVVAICAEYDRPLTSLSPPALAPYSLARARLQGVPALRLPGGWLQAPLRLETTHRAALAPTRHDDALARAGRFFAELEEAWRCRVGSVLEIAWPVYGPEHGGPLLDAVAGTP
Ga0209076_10161612	F010345	AGGAG	MVSLIFCLSGGKEAVMGLYARFWRYSIDTYGGAPLLLLINLVQIAILGWVVSQALRAQAERVAPGISSEARRIRAARRAEIWQKQVRPVAMTMMLLGPGLGLGMSTLVGALGMGALGDAMGTQAGAEVLAQTMARAYREISYAYFLMVGGTFPMLLGPVIVLAARRLDEEGSDARGGDPEEVLLHTLKSLLAVTEAQARRAQADAARMHALLAETLQRGAAA

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