Basic Information | |
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Taxon OID | 3300027645 Open in IMG/M |
Scaffold ID | Ga0209117_1000004 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 292026 |
Total Scaffold Genes | 261 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 205 (78.54%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Thunder Bay, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000169 | Metagenome / Metatranscriptome | 1788 | Y |
F006398 | Metagenome / Metatranscriptome | 374 | Y |
F013108 | Metagenome / Metatranscriptome | 274 | Y |
F040818 | Metagenome / Metatranscriptome | 161 | Y |
F052914 | Metagenome / Metatranscriptome | 142 | Y |
F073130 | Metagenome | 120 | Y |
F073171 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209117_1000004112 | F073171 | GGAG | MTRRQTSKRNISSIVGAALLVIGSTVLVTYSAALGWQFQAALNNTAIDSLGFFGSVGLASLHAVRIVALDHAVLLSVMHRILVLCSALIVTLIGIALLLRRPTGVNALGRRGVSALPKGD |
Ga0209117_1000004130 | F000169 | GGAGG | MARKSRLTRVAVGIGTAIGKADRKAHQVARAGLAAKQELEDIAKQVEGLKRQLQKTTKRLKKALS |
Ga0209117_1000004184 | F040818 | AGGAG | MSTNAVPLNSRKSWLLSLDSWAVVAALLAALLIRAGVFTRVPW |
Ga0209117_100000420 | F013108 | AGG | MGSGIIVQYMGFEAKPLTREYTFNVREAGQEREFRLHIANEAFVSHRASYQDAPGICALRLQVELATYSNHPPETRYEISGAELDSYRQARMPKTGRKVRENF |
Ga0209117_1000004202 | F073130 | AGGAG | VLLKSICFSVVSLYLFLRVPMAAGAPPGDACDLPKDLRSEVATKYPGKKVVTLADLQDDDRGFFQKDHNDSCPGLVKVDFYGDGKPTLAMVLIGNGEGKDSSVLVVAHWTGAGWKISTLATGGPTVPVVWSQDPGEYQDVYGQKKIHATEPVVVFCRYESWAILYAWTGGRVAKIWLQD |
Ga0209117_1000004256 | F006398 | N/A | MRYCQTCRLQFDKRGFSRHTLSVFHRKAKLIRAMLERNCITHADIARRIGVTRERVRQLALQMGFADGRSRHAVCRMERRRKEMAEFFVQAQKRGFAVEPLGTTSAYINGKLCVQRKACWHNIGKSEHKYTYVSIRQPAGRFDICAWKLPDGRFLILPKKLTGFRQTTFNPEESEYLGTASSSHYYRQHIERWSLLGRPRRSK |
Ga0209117_100000491 | F052914 | AGGAGG | MLRKFLCSASLAGLMLSGIAAHARPAQEKSQPKQRNEETKSASGKVTDIASDKKSFTIEVSDGNAKHTMQFILDGNTQVQGKVSVGTDATVEFQPTPDGKNLAITITPRSSQSPSPGN |
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