NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209117_1000004

Scaffold Ga0209117_1000004


Overview

Basic Information
Taxon OID3300027645 Open in IMG/M
Scaffold IDGa0209117_1000004 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)292026
Total Scaffold Genes261 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)205 (78.54%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000169Metagenome / Metatranscriptome1788Y
F006398Metagenome / Metatranscriptome374Y
F013108Metagenome / Metatranscriptome274Y
F040818Metagenome / Metatranscriptome161Y
F052914Metagenome / Metatranscriptome142Y
F073130Metagenome120Y
F073171Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209117_1000004112F073171GGAGMTRRQTSKRNISSIVGAALLVIGSTVLVTYSAALGWQFQAALNNTAIDSLGFFGSVGLASLHAVRIVALDHAVLLSVMHRILVLCSALIVTLIGIALLLRRPTGVNALGRRGVSALPKGD
Ga0209117_1000004130F000169GGAGGMARKSRLTRVAVGIGTAIGKADRKAHQVARAGLAAKQELEDIAKQVEGLKRQLQKTTKRLKKALS
Ga0209117_1000004184F040818AGGAGMSTNAVPLNSRKSWLLSLDSWAVVAALLAALLIRAGVFTRVPW
Ga0209117_100000420F013108AGGMGSGIIVQYMGFEAKPLTREYTFNVREAGQEREFRLHIANEAFVSHRASYQDAPGICALRLQVELATYSNHPPETRYEISGAELDSYRQARMPKTGRKVRENF
Ga0209117_1000004202F073130AGGAGVLLKSICFSVVSLYLFLRVPMAAGAPPGDACDLPKDLRSEVATKYPGKKVVTLADLQDDDRGFFQKDHNDSCPGLVKVDFYGDGKPTLAMVLIGNGEGKDSSVLVVAHWTGAGWKISTLATGGPTVPVVWSQDPGEYQDVYGQKKIHATEPVVVFCRYESWAILYAWTGGRVAKIWLQD
Ga0209117_1000004256F006398N/AMRYCQTCRLQFDKRGFSRHTLSVFHRKAKLIRAMLERNCITHADIARRIGVTRERVRQLALQMGFADGRSRHAVCRMERRRKEMAEFFVQAQKRGFAVEPLGTTSAYINGKLCVQRKACWHNIGKSEHKYTYVSIRQPAGRFDICAWKLPDGRFLILPKKLTGFRQTTFNPEESEYLGTASSSHYYRQHIERWSLLGRPRRSK
Ga0209117_100000491F052914AGGAGGMLRKFLCSASLAGLMLSGIAAHARPAQEKSQPKQRNEETKSASGKVTDIASDKKSFTIEVSDGNAKHTMQFILDGNTQVQGKVSVGTDATVEFQPTPDGKNLAITITPRSSQSPSPGN

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