NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209117_1000247

Scaffold Ga0209117_1000247


Overview

Basic Information
Taxon OID3300027645 Open in IMG/M
Scaffold IDGa0209117_1000247 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29079
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013877Metagenome / Metatranscriptome267Y
F033558Metagenome177Y
F039020Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209117_100024719F039020GGAMTGISGAAAARAADAMIRTMGGTEVILLFPAAGMPADAVAGLGLVDPGVVQAAISPVIVREFTMESGGLRPRISDGPRRQIELLAGVSAMAEQVSQRNVASADVLFETALGLVYDGEVFHIQGFVVERLAGVAYLYRVAAVS
Ga0209117_100024723F033558N/AMKQSHVEIEEKVQPTSVNDSNPTLFASLPLVQFIDRTLEIERKSVGAEFRRCDAALEAHSRMDDLRHAAGDDKVYKANKDLERRLEEMNNFREQINQERAEYLRRDMYDREHTNLAERVKNLEIVRGEQAGRTAAYASMVGVVVIMSQIVLHFWK
Ga0209117_10002476F013877GAGGMNFISSMEGEEIQVELKYCERCGALWLRLQGADGVYCASCRVCVAARQNPGEAPPRKARSRRKARVRVTDLRGTDIQRENFQSPPCIEYLQGVATMEVRV
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