NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209117_1004107

Scaffold Ga0209117_1004107


Overview

Basic Information
Taxon OID3300027645 Open in IMG/M
Scaffold IDGa0209117_1004107 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5044
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003900Metagenome / Metatranscriptome463Y
F011612Metagenome / Metatranscriptome289Y

Sequences

Protein IDFamilyRBSSequence
Ga0209117_10041073F003900GAGVVRLLRYHFEEERLRTKARSTAPKAFSIAVDFPSFQEHNPLESPLQRGRSGFGSGIMYYPPPLRGRSVLAGKKVLLIDRCQATCEVRASVLRSHGVEVHAAEEISTARFLWQPNIYDLVMLDVRRYSPAETLEFYEQIKQASPRERVVFLVGPPTYLSLTWPGEVIAEDASSGQWGETVKRFLVAA
Ga0209117_10041077F011612N/AMPGLPTQLPWRRFVCVLRKLGYTAQKGKAGAVRSFSNPNRMPKIISLREPHPGKNLGATMLRKYLRQLLLNEDEFLHFLEDC
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