NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209117_1004461

Scaffold Ga0209117_1004461


Overview

Basic Information
Taxon OID3300027645 Open in IMG/M
Scaffold IDGa0209117_1004461 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4830
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009185Metagenome / Metatranscriptome322Y
F012737Metagenome / Metatranscriptome278Y
F058353Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209117_10044611F012737AGGCGGMIGPMAIPVALLATTRKHGNPNWGRPIPLIPALLTEFELRVRQLQLTARMYASSLELRAWCEQNRNRCYVPEWLLEEWGITVDPNFSAAA
Ga0209117_10044612F009185GGAGVIFSGGMAISVEMQHTGDSGLQAEVRAIIEHALADRPGDWRVSIIGSQANDRWEMRITGPNAFERSYSLEGAAGEHEPHVIGNLVARMVPGRKP
Ga0209117_10044614F058353GGALIVGSQANDRWELKITGPNAFERSYTLEGSAVEHEPHVIGKLVARMEQVRGL
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