Scaffold Ga0209117_1005828

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209117_1005828

Scaffold Ga0209117_1005828

Overview

Basic Information
Taxon OID	3300027645 Open in IMG/M
Scaffold ID	Ga0209117_1005828 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4235
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037998	Metagenome	167	Y
F055264	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209117_10058284	F037998	N/A	MGARSRPEDEWERYERAHDGLEATVVIYGRRPRQLIVVWGFSMLLILMIIWLETQAPVLHELVLPFYWIILAVAFYLTWRWLRARSKKDRRGADRRHADRRDNDESPGAS
Ga0209117_10058285	F055264	N/A	MGSRSGLEVEAINRLTKGVQPPVMRAILVQCLAGDIAPSAAISRMLAEGPLFTVLAAIDDVTERAASISRASDMLVHDRVDELTQVFVENVAALADVTDATKISSAAKADREARSARPR

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