Scaffold Ga0209217_1067119

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209217_1067119

Scaffold Ga0209217_1067119

Overview

Basic Information
Taxon OID	3300027651 Open in IMG/M
Scaffold ID	Ga0209217_1067119 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1058
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071712	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209217_10671191	F071712	GGAG	MLARTAVLSACSTAVVILVSAGVSAAFELNQVRTTHYGWLNNRCGSGNEMPGDCISTKGQTESFRANISSDGSFQHPTTLAVAAQCLQGRRACPITRSGYLRLGDLVFVPDLGWFRVEDTCGACAAGQSNAGAIALWTATASGTGIQQSHLDQRRPTIQVFHPSEPIPDALKSLRANLDVWQPLVWTDLQHMTAANATSLFVDLHLKWSPTLAPARSATPAEPTVRPRDATRPAERVGALPGHLPVLPDPLAGRGR

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