NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209007_1000004

Scaffold Ga0209007_1000004


Overview

Basic Information
Taxon OID3300027652 Open in IMG/M
Scaffold IDGa0209007_1000004 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)255080
Total Scaffold Genes224 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)164 (73.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000515Metagenome / Metatranscriptome1062Y
F014166Metagenome / Metatranscriptome265Y
F065417Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0209007_100000416F000515N/AMTHFPQPHPSRRAARVQLGASVLAAIRLEDGRRTKAKLQTISATGGLLQLSSALGNGAFVELAFQTQSGPVHGMAEVLSPLRKTTAGVLQPFRFIALEDDDHRRLRTSLDQVVDRSLLGLKSSAFTIPRTI
Ga0209007_1000004175F014166N/AMNHERFPAIKIFMTGASLLFPVALLLSQVAAQTPHKNEAKAGASSNVQQELVRIETGFFEAWKTKDQAYFREHMPENGIFWGEDGTFSRDQQLADQQDSAKACTVEGYGLSDFGALPLGTGAYLLTYKAEQYATCNRIPVPIHVNGSSIYILKAGHWQAIYRAEVPLKNQS
Ga0209007_100000435F065417GGAGGLRKLALLAPVFAFLLSAHFAVAQQGDIMFGGGTLLASSPSGGLSSFQSPSEKGGAYLNVTGDVIGFKHRLGFGVETAWRASPGNYADYSGETYRPILTDFNAVFQPKLGKKLGLDVFGGIGIASTRFYVPSIVSCSYFSGCINYTSSDHFMEDFGAGLRYYVWHHFFVRPEVHYYHIQNNVEFNSDSVVRVGGSIGYTIGND
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