Basic Information | |
---|---|
Taxon OID | 3300027652 Open in IMG/M |
Scaffold ID | Ga0209007_1000023 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 118994 |
Total Scaffold Genes | 116 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 83 (71.55%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Algoma, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000249 | Metagenome / Metatranscriptome | 1459 | Y |
F000426 | Metagenome / Metatranscriptome | 1154 | Y |
F001709 | Metagenome / Metatranscriptome | 648 | Y |
F003629 | Metagenome / Metatranscriptome | 476 | Y |
F017346 | Metagenome / Metatranscriptome | 241 | Y |
F019610 | Metagenome / Metatranscriptome | 228 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209007_1000023110 | F017346 | N/A | MGLFDAFRKDEVTGTKVLVGQLGTKFDEHLKSDLRVYKRFYPAATSAAFTTIAELRGAVVHKYDVLHLFCDVGNDGVISDASGDCISGAELLKAAVDADVKLLWIGNDNLQEAYDAGFKTKGMKINVVLTLRRLGSNTSLFLDNLLTKMTAGETLAKAWSVASSPEGKSVQPDVPHTISSLGRGSVVLR |
Ga0209007_1000023112 | F019610 | GAGG | MRAFLANLTPKARMLLTIPLILIAYPVVTILIPALIRAAVPDVVRSVLNLL |
Ga0209007_100002319 | F003629 | AGAAG | MKSDRLLNRRVIFKLHGMDPLDATVLKQDATGYWIRGGTLAGKLDESRCSLPESDVRYLEFCQIEWMRAPRGR |
Ga0209007_100002368 | F000426 | AGGGGG | MKDIHEVLRQKQAKYAALGKQIEMLQQAAEKLREVAPLLAENDDEDNAVLAEVDDASPSDAMAAKAGAGGSGATASKGARPTAPRWP |
Ga0209007_100002392 | F000249 | GGAGG | MKTLAWILVCPVLISALAAAQTAPPASDRVQNERIENDNEDRMFFPHDMFYGWGELDLAPPHNEIDPNLCAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGQLRRFMVFGAPSFLFGKTVPQTLYTWSPDAIGVEHSWGGSVYIAKGFEFRVTQHFLFDRLGARDTNLGVADLGNNGPWGRYMTVGVRKYFGTRRW |
Ga0209007_100002393 | F001709 | GGAG | MPQEVSVSYQAIKSKVYRLIDALVVGEKSEADVQESIRRWWDLIHPADRPIAQKYLLAVLEHSHLAVDAIEEGLMDATDQDAVRPSGSPRSMRLIRIVKQTTRHSLSTTA |
⦗Top⦘ |