Scaffold Ga0209007_1000082

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209007_1000082

Scaffold Ga0209007_1000082

Overview

Basic Information
Taxon OID	3300027652 Open in IMG/M
Scaffold ID	Ga0209007_1000082 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	58755
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	49 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041331	Metagenome / Metatranscriptome	160	Y
F063891	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209007_100008211	F063891	AGGAGG	MSARQCPNCMAFVPAGQIVAYSYDLVCPNCQHPLEIAPVSQYLSAFTGLVAGVIVWWLANTHYSNESGALSWVLPMLYSYLAFSVVAPLALIFTADLKLKPLDAVDIQYGASAAPPSHHH
Ga0209007_100008239	F041331	AGGAGG	MSRRKMNCVLTVLAALALVLSIATHTTPAKDAKSTVTPIVKSDVKLLKPATLGGSDLKAGDYSVTADDTHAKFSKGGKVVAEVPIQWKDEASKAKFTTVVVDGNQIKEIHFGGKMKYVEVTQ

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