Scaffold Ga0209388

Basic Information
Taxon OID	3300027655 Open in IMG/M
Scaffold ID	Ga0209388_1000358 Open in IMG/M
Source Dataset Name	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209388_1000358 Open in IMG/M

Source Dataset Name

Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9669
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (56.25%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9669

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (56.25%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	Eel River Critical Zone Observatory, California, USA
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Eel River Critical Zone Observatory, California, USA

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y
F034511	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209388_10003582	F034511	GGA	MGAGTASWVYTTRALGGFGLGNLIQWNASASVLLLPISIPLLIGGVGLCTYFLAMRRTWRASNRIESALYELEALVGQKSGVAGPLLGVGVIPEAKRGGNRSIHLPSFNLGSKALGVALVEAVLLIIIYGGLVREYASNVNMQNWVQANFAPGTYLLNYNAVLVLAGLLGVLIFQLLPRKFQAKKVKAGPSI
Ga0209388_10003583	F001571	GAG	MSGPVIDKRLALIHRIIVPDKEYPKEYGILVTDSRSIFIRQKKTRSSYWLRGEMRFGTALVTDVIPKTLEDFEQTGLESLTADPANITVPHEAVVSLVMGKEEPEFRAREFFVWLTMRRQGHRFQVYNFQMKYQHSQKLEPLIKFYMVPLGAYFKPERQTKSRETILREYATDALGIFQKVLPAKIISS
Ga0209388_10003584	F020766	AGG	MDLVTGGIALFTIMVAAGIIPLIMAIKVKVRGLRVLSLLLGLFAVVHGFYHLAFGFQQELLADAVFEPISLLLLIGLGTYYSKVGIA
Ga0209388_10003585	F017116	GGA	LASDPIITLFETFNLVLILIAFAIFARLAFKGKSLGSFRFQLSIFLLIWVISEIPHIGESIGFLTVGAYEDTGLYLHAASMAVFAIFVGWRSLRFLSFHPPPPLSTVSLPAQTPRVLKS
Ga0209388_10003586	F011479	AGG	MSAVSFDDLVSQSVSETMSKILGATTWKSVNFFFDTKTAAREPEAFAALLDKVFGFTSKVLQKKIAETLLNKVGAVQPSNTLDFRQILRLAKAKFPRTTLSGQIG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209388_1000358

Overview

Ecosystem & Geography

Associated Families

Sequences