Scaffold Ga0209388_1003279

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209388_1003279

Scaffold Ga0209388_1003279

Overview

Basic Information
Taxon OID	3300027655 Open in IMG/M
Scaffold ID	Ga0209388_1003279 Open in IMG/M
Source Dataset Name	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3997
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	Eel River Critical Zone Observatory, California, USA
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025584	Metagenome / Metatranscriptome	201	Y
F037102	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209388_10032793	F037102	AGGAGG	MNGSVLEFTEQVLRPAVHEKILLRAAELVALGWTRGTAARDAEERKVRSTAPQATAWCVVGAVDRALYELLNVDVYALLGLEVDAYDTVPCPLEVLRALRRPLQHVLGRRDLAHWNDHGCPGPAAAEQLLREAAATAARSCDGSGM
Ga0209388_10032795	F025584	GAGG	VGDPRLDEPRRWGVFWIHHEAEELRVHHRATIPAGHARALVVTVLASGRVPPLQATLFDLEDAAGRPILRRFWGTACPRDEVVYVVLFINERCLVFALSG

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