Scaffold Ga0209388_1003544

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209388_1003544

Scaffold Ga0209388_1003544

Overview

Basic Information
Taxon OID	3300027655 Open in IMG/M
Scaffold ID	Ga0209388_1003544 Open in IMG/M
Source Dataset Name	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3882
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	Eel River Critical Zone Observatory, California, USA
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034123	Metagenome	175	N
F079881	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209388_10035442	F079881	GAGG	VIEVKVAVASWMLFALAAVDWFTRHDFATACVAVAVNVRTTVEDFGDEPEMSVTVPRARAKPFVVSSVSVGLPQSPFVAPVTESVATGAVVPADMAIYLKPQVVDGAHPKGVSPDVTRWTHSAPAS
Ga0209388_10035443	F034123	N/A	MKGLFDLGGKGVLRLGLLVFSTLLIVGGSVFFYNRLVYERALSVSGVITGSGSTTQTGLNPAPATILILAVSAVLISLSVFGFLREVFRGRRSRKALAKESSPTASVSLPLEIGPPLQVPSIKRDWEESPKKEESKH

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