NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209388_1009336

Scaffold Ga0209388_1009336


Overview

Basic Information
Taxon OID3300027655 Open in IMG/M
Scaffold IDGa0209388_1009336 Open in IMG/M
Source Dataset NameVadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2615
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameEel River Critical Zone Observatory, California, USA
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002368Metagenome / Metatranscriptome566Y
F034123Metagenome175N
F035684Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0209388_10093362F002368N/AMAIQLTPTKIKGSKYLLIPKDLARLLEIEDKSILNLTIEESETGQRLVYSIRERPHHLAD
Ga0209388_10093363F035684GAGMGLLPEFFTLLGIEIFAAMSLVSVLLDRDIPSSAQWLFQGAAGLGLGQLVVTEGFGTSSVIDASRFWISIFYLTLSVCSVAGLNIYLAAVRRKTTIASVFSGTITAPTVSVSVLFVSSYLSGVDVGLTPLTIVMLIVPALVVGLCTYGILNKTFKGIGKITGPELSPVSVSVSLQTPKTYESLDLKDILGEWEESQKKKDRVA
Ga0209388_10093364F034123GGTGGMKSVKGLFDLGRKNVLRLGLLVLSTLLIVGGSVFFYDRLVYERALSVGGFTGSGSTTQTGLNPAPGTILILAVSAVLISLSVFGFLREMFRGRSNRKALARELLPTASVSLPLEIGPPLQVPSIKRDWEESPKKGESKH
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