NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209259_1000769

Scaffold Ga0209259_1000769


Overview

Basic Information
Taxon OID3300027658 Open in IMG/M
Scaffold IDGa0209259_1000769 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 2 BELIZE.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10351
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003860Metagenome464Y
F005229Metagenome407Y
F029995Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0209259_10007691F005229N/AMVSIAVSKMSMTELISVVPGMQVNGQYYRDALLSQQMLPAIKHVASATFVFQQDNASSHRASYSKKRRTQLVLISGHQTAHT
Ga0209259_10007692F003860N/AMQQRVYEYRMNSVDELKQRLIEVCNSQQQNVIDAAINEWRKQLRACMHADGQHIEHSLQAHVTNGSYGQLKYK
Ga0209259_10007699F029995N/AMFNVSALLVNDALKPATPLTNGAISETLGQFSPLSDDRLLQLVDCRESSTLIDHLSKATQTA
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