NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209259_1257204

Scaffold Ga0209259_1257204


Overview

Basic Information
Taxon OID3300027658 Open in IMG/M
Scaffold IDGa0209259_1257204 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 2 BELIZE.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)913
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001593Metagenome666Y
F011640Metagenome288Y

Sequences

Protein IDFamilyRBSSequence
Ga0209259_12572042F001593N/AMQSETCCARLAGNTGRKKVANNRDLGTIAQLCRAISSQLRHVSTIGKNLLSINMSSTRPHNMVNVGPLTAEIGSTIWGTPADFNGFLVLAALLHGI
Ga0209259_12572043F011640AGGAMCRSMVDIQSPTAEIRRGKKEELEMWANAQRDGRPAEYRWRHLFNAAKSG

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