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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027659 Open in IMG/M |
| Scaffold ID | Ga0208975_1000080 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 46635 |
| Total Scaffold Genes | 110 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 87 (79.09%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008496 | Metagenome / Metatranscriptome | 332 | Y |
| F009144 | Metagenome / Metatranscriptome | 322 | Y |
| F032097 | Metagenome | 181 | Y |
| F072347 | Metagenome | 121 | Y |
| F078715 | Metagenome | 116 | N |
| F081267 | Metagenome | 114 | N |
| F098314 | Metagenome / Metatranscriptome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208975_100008032 | F032097 | GGAG | MEFELYHEKDAGPIVRWFANKMLSILHKVEKPLYDYADMYTAVWDDYEDEDNLSVPHNQMGIFDNLEPLPQFERLAEDLI |
| Ga0208975_100008043 | F009144 | AGGAG | MFKEIDYNKHFVIGTPLVGWKADMGEEMSWIENSKQIIEKFPNAKFFTALELDGRGLEPFERVLNALKEINGDFWTYTVNDMESTVTSSNRWIRIETGRNLIREFAQRLRKTSGHHWGEDCTEENIGVVNYDAILYVDSDIVLTAELIEKLFEVDHPIVSADVPAYGLRGKAVSDNPRIEEHWNTAGMLLVNSPAFYDLPWYHNSYLNLSDDPTFQSMAERLKVRVGLENLDHTYGMTWVRKDIKAEHKGELLAVENRRIPPRNI |
| Ga0208975_100008044 | F078715 | N/A | MHKKFLSSIFSVLLVFSQATPASASDSIRYKTEKSQTIKKGKWTTINFNGKTSIQGNGKRSLFCYQVVLNTKGKKKPKYVKVRMVRVGSGKNNATATNTYFFTSKPDKKFVASQCWTILTEHPIVLQVRISGGSKTYQTDISQFKMWTPGGDYPQDFSDFIPETTIN |
| Ga0208975_100008046 | F098314 | GGAGG | MKKWLKDKFRETLNQTFTLLGMFVAWAVLDGSAKTVVGWAIMLCVVVWLFSMKFREEKEEEENGKK |
| Ga0208975_100008066 | F072347 | AGGA | MDNRTKAEILVQFTQDEFNSGEYEEFFDYNDLGIPLSIAIVQDMVILTDSGEELLEETWKDLCLLFDANPDNEYETIDDLTTK |
| Ga0208975_100008073 | F081267 | AGGAG | MSYQHHWVVVYDEDWGAFMVDAETTNVMLEEGDGTIYNKTTGHWEFAEEGSEELAEYQRLEEILAYNLTRLDLTKKV |
| Ga0208975_100008080 | F008496 | AGGAG | VDFPIPATITPMSEQVAVTPAYDPKATILVRKGYYYGTPSDSKFDLENADDISRTYWRLDALQETNNRNSRAQDKLKDYLVENFDEIGEEHATEIANIFGIDLSKEVEVEFNVTIKATVSMPVNEDVSDLSIYDFDITIESNESKYEIQEFDADIDSIDERY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |