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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027659 Open in IMG/M |
| Scaffold ID | Ga0208975_1000260 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28224 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (31.48%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001055 | Metagenome / Metatranscriptome | 791 | Y |
| F001780 | Metagenome / Metatranscriptome | 635 | Y |
| F007416 | Metagenome / Metatranscriptome | 351 | Y |
| F028738 | Metagenome / Metatranscriptome | 190 | N |
| F053132 | Metagenome / Metatranscriptome | 141 | N |
| F068577 | Metagenome / Metatranscriptome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208975_100026019 | F001055 | N/A | MPASIRHIVESTLATYLSMQTGLTTVSFLTGDSAATQTLPKAVVLCDSARPPGSLPEGAGNYDCSVRITLFSNADDTTLADHRLRCAALVGNMRDLASIQAAFTAGADASCYDVTIGSEDEGVDERSWATAFSFSVMVCLAP |
| Ga0208975_100026026 | F007416 | GAG | MASGIFIGLEECELLAIRSKAVALITEGKTLMSYSDSGSSASRSFVMPAKEMLSEASFALYQLDPQQYAALRRTTVIDVRWDNRMI |
| Ga0208975_100026029 | F001780 | AGGAGG | VAKLNDMTAPTKDAKSFDAWFFKQPKKAQDKMRENGVLPYSEMVPSKHVFDIDPNHPAWATEDGQLVRTESETFISRDHVGVMLKAFIDAIAVSNSMAFRRHVELVRWALSLPGCLDSRTIGKMHRRTHFWVRWQGKKIRKAVNSDACGLYPHVNARRDKHKAR |
| Ga0208975_100026034 | F068577 | AGG | MSHRKPDPLLLKVMSAIHETAEKPAAGFRTIDEWAVVWKCKRNAAREYVLKGMRLGIIEKRTYRKVIRKDAKPYPTAHYGEKTRQRKS |
| Ga0208975_100026037 | F053132 | AGG | MPSPTDDELAEMSKAWEVSIDRLRFLATCPHYDSKPHIRVDDYKDPADRNIAKAIREAIRGSWLPADAAKIGKVTLKEVEAFVCRHGIIWPPNCRPRLGMHGRNRSNLLANGRLTMAQAAAKGVAEGLTAGETALKYNMSGPGMYNAANRQGLKFISHMEKYGSRKGQPKHPSV |
| Ga0208975_100026047 | F028738 | AGGAG | VTTSTKHKAGQPINVILADQTIVLMWIVKTEAIRQYSVQDMKHAEVELADFEAVILSKQAKHIPEFAGATFELNKNCYHIDFVGQTVGDKINKNSVHLSKIWLSARSFFPQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |