NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208975_1001581

Scaffold Ga0208975_1001581


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1001581 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9510
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051129Metagenome144N
F052371Metagenome142Y
F091307Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208975_100158112F052371N/ALTNSEELDLEKFKLSRTSQSIASLSTALVIDELINGMQKLGIKADKMPNNADMLIMYKSIMEEYPNIKIGELSLAFDLAAKGKLDIDAETYQNFSMLYLHRILRAFARYGMQKLNEIKPAEEKKWNPRFVTDDEKIETAFDCYKKFKIWDSIIFGVDVFHILHKQGRIIVDAENTYDKVLRSMNDRMFDGSRQDKIDIKNKLKDDDYMENQCYRMAVADYFDKLIK
Ga0208975_100158116F051129N/AMTQEDEKFIQDNIYNFECVKIGFMKNLPLHILVGYEQIYRRYLDGGFILTSWCANCVADMMKRLSRYWDDYQASKILDAEVIQESVQESVQVPKKKGRPFKTKP
Ga0208975_10015815F091307N/AMKKQVTTNVRIPADWLKVSINDIMIMVTATINDVEDYIDVQVREILMPGYHCINILPQFHSSFYELVEQKCMDAYTFKMDSEYDQEYYSDYAI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.