NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1002446

Scaffold Ga0208975_1002446


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1002446 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7338
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F015570Metagenome253Y
F029673Metagenome187N
F043820Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10024462F015570GAGGMNDKLDDAFDELEFDDVTDQIRNSTYLAEQRKISTGVTDGSIQRALVRDLTENLRSLPVSNDPLLIRNDVLEEVAVELAKLPFGDTAASFAAFVRAMKS
Ga0208975_10024463F029673GGAMTKAEMVQHLRMAACNENTVTGMSNAFDLGQEHERDVIASIIFNMVKDQHLAQNIVDTMRVRE
Ga0208975_10024464F004231AGGAGMSVKPSDFKHEICVYLEGIGECLVCFDILTPGDELDADHSDDYEIDFAVFDEQDKHITYDISKKQYNHCENKAMDEMLEITTQWRKEWEEISV
Ga0208975_10024467F043820AGGMTLNDARKHLDRLREGHLMPVALTTQALLITGDIPRIPDKPLCFDSNESTDDRGGEIQNQGTESRFSYSRYLGSTTNKGT
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